Francisco Pina-Martins

Login: StuntsPT

Company: CoBiG²

Location: Lisbon

Bio: null

Blog:

Blog:

Member of

1. bionode
2. Computational Biology & Population Genomics Group
3. LabSquare
4. ReScience organization

Repositories

4Pipe4

A NGS data analysis pipeline with emphasis on SNP detection

4Pipe4_blast_match_finder

A program to discover matching SNPs between multiple 4Pipe4 runs (actually just a blast parser)

4Pipe4_to_genotyping_array

A script to convert 4Pipe4 SNP output to a genotyping array in FASTA format

4Pipe4_validator

A validator for the results of 4Pipe4 analysis pipeline

biopython

Official git repository for Biopython (converted from CVS)

BODs2016

Code for the BODs2016 quiz challange

BODs2016_presentation

Simple static web hosting

BODs2017

Bioinformatics Open Days 2017 - Slides and any other Misc. stuff

BP2017

The HTML Presentation Framework

command_line_bootcamp

Command-line bootcamp adventure in your browser

concatenator

A PERL program for DNA and protein data matrix conversion and concatenation.

concatenator2

A program to convert and/or concatenate genetic data matrices using common formats

diveRsity

diveRsity: A comprehensive, general purpose population genetics analysis package.

Entasy

Desktop Music Player using EFL

EST_data_mining_reports

A repository to hold the reports resulting from the SNP mining from EST data

evachan.org-Rscripts

Handy genetics-related R scripts

fastQt

FastQC port to Qt5: A quality control tool for high throughput sequence data.

GBS_data_analyses

A repository for reproducible data analyses

gTile

A window tiling extension for Gnome. This is the new official home of the vibou.gTile extension.

heap

null

ipyrad

Interactive assembly and analysis of RAD-seq data sets

linux-amd-staging-drm-next-git

Package for Arch AUR

linux-shell-101

Basic shell class for FCUL students

MavericK

Source code for the program MavericK, described fully at www.bobverity.com/maverick

Misc_GIS_scripts

A place to store my scrpits involving GIS data

misc_plotters

A collection of scripts for plotting several kinds of data

my-kernel-config

Git repository for my laptop kernel config (Comapl IFL90)

MyPKGBUILDs

A repository for my Arch Linux PKGBUILDs

NCBI_Mass_Downloader

A program to download large amounts of sequences from NCBI databases.

oh-my-zsh

A community-driven framework for managing your zsh configuration. Includes 40+ optional plugins (rails, git, OSX, hub, capistrano, brew, ant, macports, etc), over 80 terminal themes to spice up your morning, and an auto-update tool so that makes it easy to keep up with the latest updates from the community.

omics_tools

Code writen to be used in RAD-tag population data analysis

phoronix-test-suite

The Phoronix Test Suite open-source, cross-platform automated testing/benchmarking software.

pyrad

Assembly and analysis of RADseq data sets

pyRona

A python implementation of "Risk of non Adaptedness" method (with a bit of R too!)

pysam

Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.

QualitySNP

A user-friendly tool for SNP detection and visualisation

Radeon-tray

A simple tray icon for controlling Radeon power profiles

R_little_scripts

null

robobrowser

null

R-scripts

Collection of R scripts I used for my science

shell-extension-radeon-power-profile-manager

A small gnome shell extension for changing power profiles when using open source drivers

SpaceMix

null

Structure_threader

A wrapper program to parallelize and automate runs of "Structure", "fastStructure" and "MavericK".

styles

Official repository for Citation Style Language (CSL) citation styles.

underhanded

The ultimate underhanded dotfiles

utilities

Citation Style Language utilities

Zkill

The prototype for a zombie shooter built using pygame

Commits To