Damion Dooley

Login: Public-Health-Bioinformatics

Company: Hsiao lab, BC Public Health Microbiology & Reference Laboratory, BC Centre for Disease Control

Location: Vancouver, BC

Bio: null

Blog:

Blog:

Repositories

blast_comparison

This is a Galaxy tool to compare 24 column tabular blast search results to see differences. Used where same search is conducted against two versions of a database to determine how the database has changed and whether there are any issues with the database.

blast_reporting

A Galaxy tool that converts an NCBI BLAST XML format search result into 12, 24, 26 or custom column tabular and HTML reports.

decision-tree

A question and answer web form system for exploring the research questions and datasets pertinent to an emerging infectious disease outbreak.

ffp_phylogeny

A Galaxy tool for calculating Feature Frequency Profiles (FFP) from fasta sequence and text data.

foodon-1

The core repository for the FOODON food ontology project. This will hold the key classes of the ontology; larger files and the results of text-mining projects will be stored in other repos.

foodon-langual

THIS PROJECT HAS MOVED TO THE MAIN https://github.com/FoodOntology/foodon location.

galaxy-tool-tutorials

Galaxy tool training materials being developed for in-house workshops.

IAO

information artifact ontology

ifm

Interface Model Ontology

kipper

command line versioning tool for large key-value text files

metadata_manager

This is a spreadsheet application to facilitate tracking, reporting, exchange, and submission of metadata for various projects involving enteric bacteria surveillance. This user-friendly entry form contains fields pertaining to isolate collection and sequencing, isolate typing, geographical information, sample source, clinical details and environmental descriptors.

OBOFoundry.github.io

OBO Foundry Ontology Registry

obo-relations

RO is an ontology of relations for use with biological ontologies

purl.obolibrary.org

A new system for managing OBO PURLs

rcqc

Report Calc for Quality Control is a python command line and Galaxy bioinformatics platform tool for text-mining log and data files to create reports and even to stop workflow execution in response to critical quality control issues.

robot

ROBOT is an OBO Tool

select_subsets

A Galaxy tool to create dataset(s) of selections user has made from a tabular dataset. A separate dataset is created for each group of selected items indicated by third column [a group key]. Fourth column is unique incremented id for each row.

test-google-sheet-import

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versioned_data

The Versioned Data System manages the retrieval of current and past versions of selected reference sequence databases from a local data store.

webgl-square

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Commits To