biolab/orange3-single-cell

Name: orange3-single-cell

Owner: Bioinformatics Laboratory

Description: ?? Orange add-on for gene expression of single cell data

Created: 2017-07-18 10:14:20.0

Updated: 2018-03-19 11:48:44.0

Pushed: 2018-03-19 11:48:42.0

Homepage: https://singlecell.biolab.si/

Size: 4627

Language: Python

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README

Orange3 Single Cell

The Single Cell add-on for Orange3 adds functionality for analysis of single cell data.

Installation

To install the add-on, run

pip install .

To register this add-on with Orange, but keep the code in the development directory (do not copy it to Python's site-packages directory), run

pip install -e .

Documentation / widget help can be built by running

make html htmlhelp

from the doc directory.

Usage

After the installation, the widget from this add-on is registered with Orange. To run Orange from the terminal, use

python -m Orange.canvas

The new widget appears in the toolbox bar under the section Single Cell.


This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.