Caleydo/pathfinder_graph_reactome

Name: pathfinder_graph_reactome

Owner: The Caleydo Team

Description: pathfinder http://reactome.org/ graph binding

Created: 2017-06-28 08:55:19.0

Updated: 2017-06-28 08:56:10.0

Pushed: 2017-06-28 08:55:39.0

Homepage: null

Size: 11

Language: Python

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README

pathfinder_graph_reactome

Preparation

1. Download http://reactome.org/download/current/reactome.graphdb.tgz
2. Extract to directory
3. rename reactome.graph.db to graph.db and nest it within a databases directory
4. tar.gz it again to db_neo4j_reactome.tar.gz such that it contains databases/graph.db/...
5. move it _backup
6. run ./docker-backup restore to restore the db snapshot
7. start Pathfinder as usual
8. open: http://localhost:8080/main.html?uc=reactome

Installation

clone https://github.com/Caleydo/pathfinder_graph_reactome.git
athfinder_graph_reactome
install

Testing

test

Building

run build

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This repository is part of Phovea, a platform for developing web-based visualization applications. For tutorials, API docs, and more information about the build and deployment process, see the documentation page.