TorkamaniLab/charts

Name: charts

Owner: The Scripps Research Institute - Torkamani Lab

Description: null

Forked from: bmolparia/charts

Created: 2017-04-24 17:00:47.0

Updated: 2017-04-24 17:00:50.0

Pushed: 2017-01-19 00:29:17.0

Homepage: null

Size: 573

Language: Python

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README

Installation

git clone https://github.com/bmolparia/charts.git

pip3 install -r requirements.txt

---

Usage

 script can be used to plot tree data in different styles. It takes an
t file in the format produced by the software "mothur". The default chart
ted will be at level 3. Multiple level charts will start at root and end
r 3 as default behavior. This can be changed using the optional
meters.

Positional Arguments:

Input path to the input file Output path for the output image

Optional Arguments:

-h, –help show this help message and exit -t Plot Type The kind of chart you want to plot. Allowed values are:

            multi_pi, stacked_bar (default: None)

-d Depth The level/depth to begin plotting from (default: 1) -m MaxDepth The level/depth at which the plot ends (default: 3)