broadinstitute/firecloud-cli

Name: firecloud-cli

Owner: Broad Institute

Description: null

Created: 2017-04-12 21:19:05.0

Updated: 2017-10-27 22:25:23.0

Pushed: 2017-04-12 21:19:56.0

Homepage: null

Size: 15

Language: Python

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README

firecloud-cli

Command line tools for Firecloud

NOTE: it is highly recommended that you use the Dockerized version described below

Installation Instructions for Linux/OSX

The FireCloud CLI requires:

• Python 2.7+
• Pip (run sudo easy_install pip)
• Virtualenv (run sudo pip install virtualenv)
• Google Cloud SDK (see https://cloud.google.com/sdk/)

To install run ./install.sh and follow the instructions to add ~/.firecloud-cli/venv/bin to your default path

Usage

After installation run firecloud for usage

Dockerized Version

No installation necessary. Run:

er run --rm -it -v "$HOME"/.config:/.config broadinstitute/firecloud-cli gcloud auth login

then:

er run --rm -it -v "$HOME"/.config:/.config broadinstitute/firecloud-cli firecloud --help

for usage. To read/write files from your current directory, be sure to mount it:

er run --rm -it -v "$HOME"/.config:/.config -v "$PWD":/working broadinstitute/firecloud-cli firecloud -m push my-file.wdl