Name: atmosphere
Owner: CyVerse
Description: Where cloud lives.
Created: 2013-02-18 23:54:07.0
Updated: 2018-01-18 12:42:35.0
Pushed: 2018-01-10 16:07:16.0
Homepage: https://atmo.cyverse.org
Size: 180477
Language: Python
GitHub Committers
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Other Committers
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Atmosphere addresses the growing needs for highly configurable and customized computational resources to support research efforts in plant sciences. Atmosphere is an integrative, private, self-service cloud computing platform designed to provide easy access to preconfigured, frequently used analysis routines, relevant algorithms, and data sets in an available-on-demand environment designed to accommodate computationally and data-intensive bioinformatics tasks.
Install the required python packages
install -r requirements.txt
A separate environment is provided for developers
install -r dev_requirements.txt
The *requirements.txt
files are generated using
pip-tools. See
REQUIREMENTS.md for instructions on using pip-tools and
upgrading packages in Atmosphere.
There are several utility scripts in ./scripts
. To run these:
path to atmosphere>
rt DJANGO_SETTINGS_MODULE='atmosphere.settings'
rt PYTHONPATH="$PWD:$PYTHONPATH"
on scripts/<name of script>
See HACKING.md.
It is recommended that you use the git pre-commit
hook to ensure your code
is compliant with our style guide.
s $(pwd)/contrib/pre-commit.hook $(pwd)/.git/hooks/pre-commit
To automate running tests before a push use the git pre-push
hook to ensure
your code passes all the tests.
s $(pwd)/contrib/pre-push.hook $(pwd).git/hooks/pre-push
When master is pulled, it's helpful to know if a pip install
or a manage.py
migrate
is necessary. To get other helpful warnings:
s $(pwd)/contrib/post-merge.hook $(pwd)/.git/hooks/post-merge
Imports should be grouped into the sections below and in sorted order.
See LICENSE.txt for license information
The following individuals who have help/helped make :cloud: great appear in alphabetic order, by surname.
Where the cloud lives!