SpaceML/GalaxyGAN_python

Name: GalaxyGAN_python

Owner: SpaceML

Description: This project is the implementation of "Generative Adversarial Networks recover features in astrophysical images of galaxies beyond the deconvolution limit" in python.

Created: 2017-02-21 14:43:59.0

Updated: 2017-12-15 08:03:35.0

Pushed: 2017-08-18 13:43:19.0

Homepage: null

Size: 43

Language: Python

GitHub Committers

UserMost Recent Commit# Commits
Yiru Chen2017-03-08 05:32:23.016

Other Committers

UserEmailMost Recent Commit# Commits
Hantian Zhanghantian@sgd-hanzhang-01.ethz.ch2017-08-18 13:43:09.015
Ubuntuubuntu@ip-172-31-49-118.ec2.internal2017-03-08 03:39:24.02

README

GalaxyGAN_python

This project is the implementation of the Paper “Generative Adversarial Networks recover features in astrophysical images of galaxies beyond the deconvolution limit” on python. It is the python version of https://github.com/SpaceML/GalaxyGAN. This python version doesn't include deconvolution part of the paper.

Amazon EC2 Setup
EC2 Public AMI

We provide an EC2 AMI with the following pre-installed packages:

as well as the FITS file we used in the paper(saved in ~/fits_train and ~/fits_test)

AMI Id: ami-96a97f80

. (Can be launched using p2.xlarge instance in GPU compute catagory)

Launch an instance.

Connect to Amazon EC2 Machine

Please follow the instruction of Amazon EC2.

Prerequisites

Linux or OSX

NVIDIA GPU + CUDA CuDNN (CPU mode and CUDA without CuDNN may work with minimal modification, but untested)

Dependencies

We need the following python packages: tensorflow, cv2, numpy, scipy, matplotlb, pyfits, and ipython

Get Our Code

Clone this repo:

clone https://github.com/SpaceML/GalaxyGAN_python.git 
GalaxyGAN_python/
Get Our FITS Files

The data to download is about 5GB, after unzipping it will become about 16GB.

 download.sh 
Run Our Code
Preprocess the .FITs

If the mode equals zero, this is the training data. If the mode equals one, the data is used for testing.

on roou.py --input fitsdata/fits_train --fwhm 1.4 --sig 1.2 --mode 0
on roou.py --input fitsdata/fits_test --fwhm 1.4 --sig 1.2 --mode 1

XXX is your local address. On our AMI, you can skip this step due to all these have default values.

Train the model

If you need, you can modify the constants in the Config.py.

on train.py gpu=1

You can appoint which gpu to run the code by changing “gpu=1”.

This will start the training process. If you want to load the model which already exists, you can modify the model_path in the config.py.

Test

Before you try to test your model, you should modify the model path in the config.py.

on test.py gpu=1

The results can be seen in the folder “test”.


This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.