labsquare/QVcf

Name: QVcf

Owner: LabSquare

Description: a Variant VCF parser for Qt/C++

Created: 2017-02-18 19:10:19.0

Updated: 2017-02-18 21:49:10.0

Pushed: 2017-02-18 21:54:18.0

Homepage: null

Size: 7

Language: C++

GitHub Committers

User	Most Recent Commit	# Commits

Other Committers

User	Email	Most Recent Commit	# Commits

README

QVcf

A simple variant vcf parser based on Qt/C++. QVcf use the same semantics than pyvcf

Example

lude <QCoreApplication>
lude "vcfreader.h"

main(int argc, char *argv[])

QCoreApplication a(argc, argv);
vcf::VcfReader reader("yourfile.vcf");
if (reader.open())
{
    qDebug()<<reader.infos().keys();
    qDebug()<<reader.metadata().keys();
    qDebug()<<reader.samples();

   while (reader.next())
   {
       qDebug()<<reader.record().chrom();
       qDebug()<<reader.record().pos();
       qDebug()<<reader.record().ref();
       qDebug()<<reader.record().alt();
   }


}

return a.exec();