Duke-GCB/Sun-Grid-Engine-Ansible

Name: Sun-Grid-Engine-Ansible

Owner: Duke Center for Genomic and Computational Biology

Description: GridEngine deployment for SMRT Link cluster

Created: 2017-02-17 20:43:19.0

Updated: 2017-08-29 04:07:12.0

Pushed: 2017-02-17 20:55:21.0

Homepage: null

Size: 44714

Language: Ruby

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README

Sun Grid Engine

Install and Configure Sun Grid Engine on Ubuntu 12.04 Cluster

Ubunut 12.04 LTS Vagrant box

Check that you can get Ubuntu Precise 64 from

$ vagrant init ubuntu/precise64; vagrant up --provider virtualbox

Install Ansible

Ubuntu LTS 12.04

 $ sudo apt-get install software-properties-common
 $ sudo apt-add-repository ppa:ansible/ansible
 $ sudo apt-get update
 $ sudo apt-get install ansible

Other Linux Distributions

to install on another Linux Distribution check out Ansible Docs

Hosts File

Here is a sample of hosts file

[servers]
master  ansible_ssh_host=192.168.0.10 ansible_ssh_user=vagrant  ansible_ssh_pass=vagrant
slave1  ansible_ssh_host=192.168.0.11 ansible_ssh_user=vagrant  ansible_ssh_pass=vagrant
slave2  ansible_ssh_host=192.168.0.12 ansible_ssh_user=vagrant  ansible_ssh_pass=vagrant

[masters]
master  ansible_ssh_host=192.168.0.10 ansible_ssh_user=vagrant  ansible_ssh_pass=vagrant

[slaves]
slave1  ansible_ssh_host=192.168.0.11 ansible_ssh_user=vagrant  ansible_ssh_pass=vagrant
slave2  ansible_ssh_host=192.168.0.12 ansible_ssh_user=vagrant  ansible_ssh_pass=vagrant

Configure Passwordless SSH

This section shows how to make a passwordless SSH among cluster's nodes.

 $ ssh-keygen -t rsa
 $ cp ~/.ssh/id_rsa* roles/common/files/

Setup SGE Cluster

Finally, setup your Sun Grid Engine Cluster using Ansible

$ ansible-playbook -i hosts playbook.yml -vvvv