hammerlab/pygdc

Name: pygdc

Owner: Hammer Lab

Description: Python API for Genomic Data Commons

Created: 2016-09-15 15:21:35.0

Updated: 2017-07-19 15:29:17.0

Pushed: 2016-09-27 23:32:23.0

Homepage: null

Size: 32

Language: Python

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README

PyGDC

Python API for accessing Genomic Data Commons

Basic API

Cases

 pygdc import get_cases
 pygdc.filters import equals_filter


lts = get_cases(
filters=equals_filter('project.primary_site', 'Lung'), 
fields='demographic.gender,project.disease_type', 
max_results=50

Cohorts Example

Using cohorts

rt pygdc

c.build_cohort(
primary_site='Lung', 
cohort_cache_dir='cache-dir')