nmdp-bioinformatics/service-haplotype-frequency-curation

Name: service-haplotype-frequency-curation

Owner: NMDP/Be The Match Bioinformatics Research

Description: Service used for curation of Haplotype Frequency

Created: 2016-08-10 21:09:18.0

Updated: 2017-11-06 20:59:44.0

Pushed: 2017-12-11 15:26:40.0

Homepage: null

Size: 5931

Language: Java

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README

Haplotype Frequency Curation

Service to help curate Haplotype Frequencies.

Development Overview

Pre-requisites:

• JDK 8
• Apache Maven
• Docker

Build the application

clean package

Setup Database

The project is setup to use mysql Docker instance for local development.

er-compose up -d

The phpMyAdmin page should be available at http://localhost:9999/ Login with hfcus_user user and hfcus_user1 as password.

Use docker-compose stop and docker-compose rm to stop and remove the db containers.

Run the application

Start your server as a simple java application
Check your JDK version with java -version

With Java 8:

a -jar target/service-haplotype-frequency-curation-0.0.1.jar

With Java 9:

 --add-modules java.xml.bind -jar target/service-haplotype-frequency-curation-0.0.1.jar

You can view the api documentation in swagger-ui by pointing to http://localhost:8080

Using the service

See [client/] directory for examples on using it from various languages. Eg. for Perl