samtools/htslib-plugins

Name: htslib-plugins

Owner: samtools

Description: Plugins for use with HTSlib

Created: 2016-08-10 14:36:04.0

Updated: 2017-01-17 02:45:38.0

Pushed: 2017-12-07 18:15:38.0

Homepage: null

Size: 34

Language: C

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README

Plugins for use with HTSlib.

iRODS

The hfile_irods plugin provides access to remote data stored in iRODS. It can be built for iRODS 3.x, 4.1.x, or 4.2 onwards, and the resulting plugins can be renamed with version numbers so that they can be installed alongside each other.

When built against iRODS 4.1.x, the plugin is incompatible with HTSlib 1.3.1 and earlier as it needs to be loaded with RTLD_GLOBAL. The hfile_irods_wrapper plugin can be installed in the same directory as hfile_irods to work around this problem and enable the iRODS plugin to be used with these earlier versions of HTSlib.

Memory-mapped local files

The hfile_mmap plugin provides access to local files via mmap(2).


This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.