igemuoftATG/TensorMan

Name: TensorMan

Owner: igemuoftATG

Description: null

Created: 2016-07-06 22:42:44.0

Updated: 2016-07-06 22:42:44.0

Pushed: 2016-07-06 22:44:19.0

Homepage: null

Size: 1

Language: null

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README

Lets use docker for development and production.

theano

er run --name theano -dit -v /Users/markwang/github/iGEM2016:/root/iGEM2016 kaixhin/theano
er exec -it theano /bin/bash

persistent data volume container

er create -v /var/lib/mysql --name dbdata mysql

mysql container

er run --volumes-from dbdata --name ml_mysql -e MYSQL_ROOT_PASSWORD=1122 -d mysql
er cp $HOME/github/iGEM2016/dota2DL/db/dbinit.sql ml_mysql:/dbinit.sql
er exec -it ml_mysql bash

teractive shell
er run -it --link ml_mysql:mysql --rm mysql sh -c 'exec mysql -h"$MYSQL_PORT_3306_TCP_ADDR" -P"$MYSQL_PORT_3306_TCP_PORT" -uroot -p"$MYSQL_ENV_MYSQL_ROOT_PASSWORD"'

application container

er run --name igem2016 --link ml_mysql:mysql -dit -v $HOME/github/iGEM2016:/root/iGEM2016 -v $HOME/github/DeepLearningTutorials:/root/DeepLearningTutorials  tt6746690/igem2016:test /bin/bash

production

HOME/github
clone https://github.com/tt6746690/iGEM2016.git

er create -v /var/lib/mysql --name dbdata mysql
er run --volumes-from dbdata --name ml_mysql -e MYSQL_ROOT_PASSWORD=1122 -d mysql
er cp $HOME/github/iGEM2016/dota2DL/db/dbinit.sql ml_mysql:/dbinit.sql

l -u root -p
ce dbinit.sql

er run --name igem2016 --link ml_mysql:mysql -dit -v $HOME/github/iGEM2016:/root/iGEM2016 tt6746690/igem2016:test /bin/bash
er exec -it igem2016 bash

Resources

Official theano tutorial
Neural network demystified
Dockerfile digitalocean tutorial
dota2 cp blog summary
csc411: intro to machine learning
standord cs229 machine learning

papers

feature selector: cross entropy function


This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.