Name: bionode-mtb
Owner: Bionode Hack
Description: Bionode module to access Mouse Tumor Biology data
Created: 2016-07-05 09:27:35.0
Updated: 2016-07-05 09:27:35.0
Pushed: 2016-07-06 15:53:37.0
Homepage: null
Size: 1
Language: null
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Hompage: http://tumor.informatics.jax.org/mtbwi/pdxSearch.do
1: How do I find the set of (human) datasets that are available?
i) Visit: http://tumor.informatics.jax.org/mtbwi/pdxSearch.do
ii) Without selecting any attributes and simply clicking 'search' I can see a list of all datasets: http://tumor.informatics.jax.org/mtbwi/pdxSearchResults.do;jsessionid=460999BC96E834BF95E2EAE0BCD5FB29?modelID=&gene=
2: How do I request information on an individual dataset (or maybe a batch of datasets)?
i) Clicking on 'Model ID' [J000077451] enables you to see information on an individual dataset.
3: Where do I find the dataset attributes?
Accession number: Model ID (J000077451)
URL: http://tumor.informatics.jax.org/mtbwi/pdxDetails.do?modelID=J000077451
Title: Primary Site [Prostate gland] + Diagnosis [adenocarcinoma] + Tumor Site [brain] + Tumor Type [Metastatic] + Stage / Grade [AJCC IV/Not specified] Sex [male] + Age [75] + Race [White/Not Reported]
Description: Engraftment Host: Strain [NSG)NOD scid gamma] + Implantation Site [Right Flank] + Sample Type [Core needed Biopsy] + Variant Summary [PLEASE NOTE that PDX genomics is changing to reference GRCh38. Genomic coordinates differ depending on platform. CTP, TruSeq JAX and whole exome use GRCh38. CNV and RNA-Seq are in GRCh37 (hg19) coordinates.Variant Summary currently not available.]
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