Sage-Bionetworks/SMC-RNA-Examples

Name: SMC-RNA-Examples

Owner: Sage Bionetworks

Description: null

Forked from: thomasyu888/SMC-RNA-Examples

Created: 2016-03-29 22:32:35.0

Updated: 2016-12-05 22:15:45.0

Pushed: 2017-01-20 04:11:24.0

Homepage: null

Size: 9275

Language: Python

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README

SMC-RNA-Examples

This repository provides a selection of example workflows for various tools as a guide for how to compose a submission to the SMC RNA Challenge.

Tests

To run test workflow, please run:

phat/test/runExample.sh

To run tophat fusion workflow, please make sure you have downloaded the bowtie indexes and two fastq files. Please make sure to edit workflow/smc-tophat-input.json prior to running

runner workflow/smc-fusion-workflow.cwl workflow/smc-tophat-input.json