Name: bfrmDemo
Owner: Sage Bionetworks
Description: Demonstration code
Created: 2012-08-07 20:39:00.0
Updated: 2013-12-22 05:21:11.0
Pushed: 2012-08-08 15:37:01.0
Homepage: null
Size: 104
Language: null
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Code for demonstrating BFRM. The first QC script merely shows how an raw data from an experimentally-controlled perturbation of the Myc oncogene was normalized using a supervised method (gratis Brig Mecham of Sage Bionetworks). The second script shows the actual method where BFRM is used in two stages. First as a sparse ANOVA to identify genes with high posterior probability of being differentially expressed between the experiment and control data, and then using this feature list (restricted to posterior probability ? 0.99) to search for Myc-related factors. The 'projection' method is also quickly demonstrated here.