BioDevOps/tools-benchmarks

Name: tools-benchmarks

Owner: BioDevOps

Description: Benchmark script for various tools

Created: 2016-03-02 06:41:23.0

Updated: 2016-03-02 12:26:24.0

Pushed: 2016-03-04 04:09:24.0

Homepage: null

Size: 3

Language: Shell

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README

tools-benchmarks

Benchmark script for various tools

HOWTO

bench_exec.sh 
lid argument. (require software, templatePath, outputDir)

log convert

convert time output to seconds only.

p "^(real|user|sys)" bench_bowtie2.log | awk -F'[\tm]' -vOFS="\t" '{print $1,$2 * 60 + $3}'

result

    283.425
    0.074
   0.023
    281.689
    0.076
   0.023