UAMS-DBMI/PosdaTools

Name: PosdaTools

Owner: UAMS Department of Biomedical Informatics

Description: null

Created: 2016-02-17 23:42:51.0

Updated: 2016-02-17 23:43:59.0

Pushed: 2017-01-18 22:10:05.0

Homepage: null

Size: 44106

Language: Perl

GitHub Committers

User	Most Recent Commit	# Commits

Other Committers

User	Email	Most Recent Commit	# Commits

README

PosdaTools

Posda (Perl Open Source DICOM Archive) is an application for archival and curation of DICOM datasets.

Installation

Pre-install steps

• install all deps
• create posda system user
• create postgres user, make them admin
• clone the repository
• edit main.env to your liking (rename this to something like config.env???)

Dependencies

• git
• postgresql database server, client, and development headers >= 9.0
• perl >= 5.10
• perl modules (all installable from CPAN):
• Modern::Perl
• Method::Signatures::Simple
• DBD::Pg
• Switch
• JSON
• Data::UUID
• Text::Diff
• Term::ReadKey
• REST::Client
• Net::LDAP
• DateTime
• python >= 3.6
• python modules (from pip):
• Sanic 0.4.1
• Asyncpg 0.5.1
• Node.js >= 7.0
• npm >= 4.0
• npm modules:
• Angular 4.0.1
• angular2-busy 2.0.4
• bootstrap 4.0.0-alpha.6
• typescript 2.2.2

For Ubuntu 16.04, run this:

 apt-get update
 apt-get install -y postgresql-9.5 postgresql-server-dev-9.5 postgresql-client-9.5
 apt-get install -y libmodern-perl-perl libmethod-signatures-simple-perl libdbd-pg-perl libjson-perl libswitch-perl libdata-uuid-perl libtext-diff-perl libterm-readkey-perl libnet-ldap-perl libdatetime-perl

Create postgres user

sudo -u postgres createuser -s posda

Install Steps

• create databases
• populate databases
• add file_storage_root entry to posda_files db (taken from environment)
• prompt user for default admin password?