hurwitzlab/bowtie-to-contigs

Name: bowtie-to-contigs

Owner: Hurwitz Lab

Description: A simple pipeline using bowtie to map reads to a co-assembly

Created: 2016-02-16 20:44:26.0

Updated: 2016-02-16 20:53:48.0

Pushed: 2016-06-01 22:44:20.0

Homepage: null

Size: 66

Language: Shell

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README

bowtie-to-contigs

A simple pipeline using bowtie to map reads to a co-assembly

AND

then using anvio to annotate them for visualization (designed for SLURM batch system)

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.