Name: ComponentSearch
Owner: Bonsai team
Description: ContigSearch
Forked from: yoann-dufresne/ContigSearch
Created: 2016-01-25 10:54:04.0
Updated: 2017-01-25 14:28:35.0
Pushed: 2016-10-10 09:12:24.0
Homepage: null
Size: 61
Language: Java
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If the jar file is up to date, just download it, otherwise download all the code and run compile.sh
Then run the command line:
java -cp "ComponentSearch.jar" main.Main {options}
Options:
-n <filename> The path for the file containing the input nodes
-e <filename> The path for the file containing the input edges
-b <basename> The basename for the output files
-N x Set to x the compressed nodes filter parameter. The compressed nodes filter parameter is used
to delete compressed nodes containing only x or less input nodes.
-E x Set to x the compressed edges filter parameter. The compressed edges filter parameter is used
to delete compressed edges representing only x or less input edges from the original graph.
-oc Set true for the optimization component flag. If the oc flag is true, the algorithm will try
to move input nodes from hubs to strings of compressed nodes. For a given input node, if there is only
one neighboring string of compressed nodes then the input node is assigned to the string, otherwise
nothing append.