Name: vcftools
Owner: Wellcome Trust Sanger Institute - Human Genetics Informatics
Description: A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
Forked from: vcftools/vcftools
Created: 2016-01-05 15:47:18.0
Updated: 2016-01-05 15:47:19.0
Pushed: 2016-01-02 20:12:46.0
Homepage: https://vcftools.github.io/
Size: 841
Language: C++
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A set of tools written in Perl and C++ for working with VCF files, such as those generated by the 1000 Genomes Project.
Project website: https://vcftools.github.io/
The program package is released under the GNU Lesser General Public License version 3.0
(LGPLv3). See the LICENSE file for the complete LGPL license text.
General help about the building process's configuration step can be acquired via:
nfigure --help
nfigure
install
You many need sudo permissions to run make install.
clone https://github.com/vcftools/vcftools.git
cftools
togen.sh
nfigure
install
You many need sudo permissions to run make install.
Documentation and usage examples can be found here:
https://vcftools.github.io/examples.html
A manual page is also available. If prefix is set to /usr or if MANPATH points to
$prefix/share/man, you can access the manual page via:
vcftools
The best way to get help regarding VCFtools is to email the mailing list:
vcftools-help@lists.sourceforge.net
If you make use of VCFtools in your research, we would appreciate a citation of the following paper:
The Variant Call Format and VCFtools, Petr Danecek, Adam Auton, Goncalo Abecasis, Cornelis A. Albers, Eric Banks, Mark A. DePristo, Robert Handsaker, Gerton Lunter, Gabor Marth, Stephen T. Sherry, Gilean McVean, Richard Durbin and 1000 Genomes Project Analysis Group, Bioinformatics, 2011 http://dx.doi.org/10.1093/bioinformatics/btr330