Name: 2015-12-10-lifesciences
Owner: The ContentMine
Description: Information for participants of the life sciences workshop.
Created: 2015-11-24 14:09:22.0
Updated: 2015-12-09 11:15:03.0
Pushed: 2015-12-10 15:25:31.0
Size: 406
Language: Jupyter Notebook
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Workshop on 10 Dec 2015, 09:30-16:30, with optional hackathon at EMBL-EBI on 11 Dec 2015 (separate booking required)
Tickets available here.
Content mining technologies hold much potential for maximising scientific discovery and the reuse of research through automatedly searching, indexing and analysing the scientific literature. This workshop aims to educate and engage researchers who are interested in using mining technologies in the biomedical and life sciences.
You will receive training in retrieving full-text articles and automatically extracting useful facts before optionally having the opportunity to apply these skills to discovering genomic datasets in a hackathon on Dec 11 hosted by EMBL-EBI and DNA Digest, a Cambridge-based charity empowering efficient access and sharing of genomics data. Advice and some assistance with transport is available, places for the hackathon can be booked here.
The workshop is best suited to those with an awareness of using command line tools or enthusiasm to pick this up, but formal programming experience is not a requirement.
This workshop is offered at a heavily subsidised rate of £10 including lunch and refreshments and places are limited to 25. If you have any queries please email jenny@contentmine.org.
Please take a few minutes and fill out our evaluation form after the workshop.
ContentMine
Copyright
Copyright-holder for all works is the Shuttleworth Foundation.
Welcome!
| Time | Agenda | |—————|————–| | 9:30 AM - 10:00 AM | Introduction | | 10:00 AM - 10:30 AM | Legal & Responsible Mining | | 10:30 AM - 10:50 AM | Coffee Break | | 10:50 AM - 11:00 AM | How to work with ContentMine tools | | 11:00 AM - 11:45 AM | Building a corpus with getpapers | | 11:45 AM - 12:15 AM | sHTML and normalization | | 12:15 AM - 1:00 PM | extracting facts with AMI | | 1:00 PM - 2:00 PM |Lunch Break | | 2:00 PM - 2:15 PM | more on extracting facts with AMI | | 2:15 PM - 3:00 PM | on demand: regular expressions with ami-regex | | 3:00 PM - 3:10 PM | Coffee Break | | 3:10 PM - 3:55 PM | Facts in context with Jupyter notebooks | | 3:55 PM - 4:20 PM | free exploration with help | | 4:20 PM - 4:30 PM | Wrap-up |
We're happy you're thinking about contributing to ContentMine!
There are many ways to contribute:
If you have questions, ask us directly at DNAdigest Hackday or write our training managers a mail (mail ett stefankasberger dot at, web ett christopherkittel dot eu).
When you are online, you can find us: