hurwitzlab/docker-fizkin

Name: docker-fizkin

Owner: Hurwitz Lab

Description: null

Created: 2015-10-22 22:11:51.0

Updated: 2017-04-21 18:52:23.0

Pushed: 2017-08-28 23:15:45.0

Homepage: null

Size: 122

Language: Perl

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README

Docker Fizkin

Build or grab Jellyfish binaries:

http://www.genome.umd.edu/jellyfish.html#Release

Install needed Perl modules here:

$ cpanm -l . --self-contained --installdeps .

Build Docker image:

$ docker build -t fizkin .

Run with args:

$ docker run --rm -v /path/to/data:/work -w /work fizkin \
  run-fizkin --input_dir /work/fasta --output_dir /work/out

See Also

http://github.com/hurwitzlab/fizkin

Authors

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.