thehyve/tranSMART_Data_Curation

Name: tranSMART_Data_Curation

Owner: The Hyve

Description: Temporary repository for sharing curation scripts for public datasets.

Forked from: pandis83/tranSMART_Data_Curation

Created: 2015-10-14 08:51:23.0

Updated: 2015-10-13 16:52:34.0

Pushed: 2015-10-13 18:40:10.0

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Size: 572

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README

tranSMART_Data_Curation

Temporary repository for sharing curation scripts for public datasets.

*

Copyright 2013 Imperial College London

Author(s): Paul Williams & Ioannis Pandis

Affiliation(s): Imperial College London - Data Science Institute

Please acknowledge the author(s) and affiliated institute when using the code / data.

Licensed under the Apache License, Version 2.0 (the “License”);

you may not use this file except in compliance with the License.

You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software

distributed under the License is distributed on an “AS IS” BASIS,

WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.

See the License for the specific language governing permissions and

limitations under the License.

*/

Please note that clinical and gene expression files will need to be obtained via the TCGA portal: https://tcga-data.nci.nih.gov/tcga/

BRCA (https://tcga-data.nci.nih.gov/tcga/tcgaCancerDetails.jsp?diseaseType=BRCA&diseaseName=Breast%20invasive%20carcinoma) CRC (https://tcga-data.nci.nih.gov/tcga/tcgaCancerDetails.jsp?diseaseType=OV&diseaseName=Ovarian%20serous%20cystadenocarcinoma) UCEC (https://tcga-data.nci.nih.gov/tcga/tcgaCancerDetails.jsp?diseaseType=UCEC&diseaseName=Uterine%20Corpus%20Endometrial%20Carcinoma) OV (https://tcga-data.nci.nih.gov/tcga/tcgaCancerDetails.jsp?diseaseType=OV&diseaseName=Ovarian%20serous%20cystadenocarcinoma)