CBIIT/nci-webtools-dceg-pathway-analysis

Name: nci-webtools-dceg-pathway-analysis

Owner: NCI CBIIT Development Sandbox

Description: null

Created: 2015-10-09 17:51:57.0

Updated: 2017-06-20 18:08:53.0

Pushed: 2017-08-23 18:34:08.0

Homepage: null

Size: 1072

Language: JavaScript

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README

Purpose

ARTP2 (Adaptive Rank Truncated Product - Version 2) is an R package of biological pathway association analysis or pathway meta-analysis for genome-wide association studies (GWAS).i It also provides tools for gene-level association test as a special case. ARTP2 is an enhanced version of two previously released packages ARTP and AdaJoint.

Setup

1. In the top level directory create a directory called app
2. Move all the files from the top level directory into a directory called app
3. Get the build.sh script which generates scripts to setup, start, and stop a wsgi application using mod_wsgi-express
4. In the directory containing the app directory run the following command sh build.sh –name pathway –port 5001 –root echo $PWD

Start

1. In the directory containing the app directory execute the following script: ./setup-pathway.sh
2. In the directory containing the app directory execute the following script: ./start-pathway.sh

Stop

1. In the directory containing the app directory execute the following script: ./stop-pathway.sh