hammerlab/melanoma-reanalysis

Name: melanoma-reanalysis

Owner: Hammer Lab

Description: Online Materials: Somatic Mutations, Neoepitope Homology and Inflammation in Melanomas Treated with CTLA-4 Blockade

Created: 2015-10-07 15:00:55.0

Updated: 2017-05-02 17:28:25.0

Pushed: 2017-04-12 17:51:34.0

Homepage: http://hammerlab.org/melanoma-reanalysis

Size: 268013

Language: null

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README

Somatic Mutations, Neoepitope Homology and Inflammation in Melanomas Treated with CTLA-4 Blockade

This is the repository for hammerlab.org/melanoma-reanalysis.

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• Online Data File 1. Clinical patient data
• Online Data File 2. HLA Types
• Online Data File 3. SNVs with predicted neoepitopes
• Online Data File 4. Indels with predicted neoepitopes
• Online Data File 5. Gene quantification (Cufflinks) data
• Online Data File 6. Allele specific expression read counts
• Online Data File 7. IEDB T cell epitope data (as of 6/10/2015)
• Online Data File 8. Pathogen Homology AUCs via Topeology (MSKCC)
• Online Data File 9. Pathogen Homology AUCs via Topeology (DFCI)
• Online Data File 10. Tetrapeptide Signature AUCs
• Online Data File 11. GSEA results (zipped)
• Website 1. GSEA results