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amida-tech/dre-data

Name: dre-data

Owner: Amida Technology Solutions

Description: New DRE backend library for working with FHIR data

Created: 2015-08-14 21:51:13.0

Updated: 2016-04-14 15:06:31.0

Pushed: 2015-12-09 21:10:44.0

Homepage:

Size: 175738

Language: JavaScript

GitHub Committers

User	Most Recent Commit	# Commits
Dmitry Kachaev	2015-12-01 07:16:34.0	2
Michael Hiner	2015-12-09 21:10:44.0	58

Other Committers

User	Email	Most Recent Commit	# Commits

README

FHIR-Merge

Usage

Create a client

client = getClient('http://myFhirServer.com/base');

Create a new entry

fhirObject - fhir object to be serialized
source - source file. if present the source file will be serialized as a binary object

nt.create(fhirObject, source
ction(objectId){
//returns the id of the created object.  e.g. Patient/1/_history/1
console.log(objectId)

ction(error){
onsole.error(error)

Update an entry

fhirObject - fhir object to be serialized
source - source file. if present the source file will be serialized as a binary object

nt.create(fhirObject, source
ction(objectId){
//returns the id of the created object.  e.g. Patient/1/_history/1
console.log(objectId)

ction(error){
onsole.error(error)

Execute transaction

bundle - a valid fhir transaction object
source - source file used to create the transaction (optional)

ent.transaction(bundle, source, function(entry){
    //entry will be an array of object IDs corresponding to the transaction processed.
unction(error){

Deduplicate a patient

nt.deduplicate(patientId, function(errs, matchSet){

    // match set will be a javascript object following the structure below

matchSet:

changeType - – match - for an object for which an exact match or matches has been found – update - for an object for which a partial match has been found – new - for an object for which no matches or partial matches has been found
lhs - the originating object.
rhs - only present for changeType update, this is the partial match to the lhs object
matches - only present for changeType match, this will contain an array of objects that match the lhs object



"changeType": "match",
"lhs": {
  "resourceType": "Condition",
  "id": "450",
  "meta": {
    "versionId": "1",
    "lastUpdated": "2015-09-21T14:42:59.442+00:00"
  },
  "patient": {
    "reference": "Patient/dupe"
  },
  "code": {
    "coding": [
      {
        "system": "http://snomed.info/sct",
        "code": "233604007",
        "display": "Pneumonia"
      }
    ]
  },
  "category": {
    "coding": [
      {
        "system": "http://snomed.info/sct",
        "code": "404684003",
        "display": "Finding"
      }
    ]
  },
  "clinicalStatus": "completed",
  "onsetPeriod": {
    "start": "2007-01-03"
  }
},
"matches": [
  {
    "resourceType": "Condition",
    "id": "372",
    "meta": {
      "versionId": "1",
      "lastUpdated": "2015-09-21T14:42:58.833+00:00"
    },
    "patient": {
      "reference": "Patient/dupe"
    },
    "code": {
      "coding": [
        {
          "system": "http://snomed.info/sct",
          "code": "233604007",
          "display": "Pneumonia"
        }
      ]
    },
    "category": {
      "coding": [
        {
          "system": "http://snomed.info/sct",
          "code": "404684003",
          "display": "Finding"
        }
      ]
    },
    "clinicalStatus": "completed",
    "onsetPeriod": {
      "start": "2007-01-03"
    }
  }
]


"changeType": "match",
"lhs": {
  "resourceType": "Observation",
  "id": "386",
  "meta": {
    "versionId": "1",
    "lastUpdated": "2015-09-21T14:42:58.684+00:00"
  },
  "code": {
    "coding": [
      {
        "system": "http://snomed.info/sct",
        "code": "409586006",
        "display": "Complaint"
      }
    ]
  },
  "valueCodeableConcept": {
    "coding": [
      {
        "system": "http://snomed.info/sct",
        "code": "233604007",
        "display": "Pneumonia"
      }
    ]
  },
  "appliesPeriod": {
    "start": "2008-01-03",
    "end": "2008-01-03"
  },
  "status": "completed",
  "identifier": [
    {
      "value": "ab1791b0-5c71-11db-b0de-0800200c9a66"
    }
  ],
  "subject": {
    "reference": "Patient/dupe"
  }
},
"matches": [
  {
    "resourceType": "Observation",
    "id": "464",
    "meta": {
      "versionId": "1",
      "lastUpdated": "2015-09-21T14:42:59.373+00:00"
    },
    "code": {
      "coding": [
        {
          "system": "http://snomed.info/sct",
          "code": "409586006",
          "display": "Complaint"
        }
      ]
    },
    "valueCodeableConcept": {
      "coding": [
        {
          "system": "http://snomed.info/sct",
          "code": "233604007",
          "display": "Pneumonia"
        }
      ]
    },
    "appliesPeriod": {
      "start": "2008-01-03",
      "end": "2008-01-03"
    },
    "status": "completed",
    "identifier": [
      {
        "value": "ab1791b0-5c71-11db-b0de-0800200c9a66"
      }
    ],
    "subject": {
      "reference": "Patient/dupe"
    }
  }
]


"changeType": "new",
"lhs": {
  "resourceType": "Patient",
  "id": "dupe",
  "meta": {
    "versionId": "2",
    "lastUpdated": "2015-09-21T14:42:59.248+00:00"
  },
  "extension": [
    {
      "url": "http://hl7.org/fhir/StructureDefinition/us-core-religion",
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "urn:oid:2.16.840.1.113883.5.1076",
            "code": "1013",
            "display": "Christian (non-Catholic, non-specific)"
          }
        ]
      }
    },
    {
      "url": "http://hl7.org/fhir/Profile/us-core#race",
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "urn:oid:2.16.840.1.113883.6.238",
            "code": "2106-3",
            "display": "White"
          }
        ]
      }
    },
    {
      "url": "http://hl7.org/fhir/Profile/us-core#ethnicity",
      "valueCodeableConcept": {
        "coding": [
          {
            "system": "urn:oid:2.16.840.1.113883.6.238",
            "code": "2186-5",
            "display": "Not Hispanic or Latino"
          }
        ]
      }
    },
    {
      "url": "http://hl7.org/fhir/StructureDefinition/birthPlace",
      "valueAddress": {
        "city": "Beaverton",
        "state": "OR",
        "postalCode": "97867",
        "country": "US"
      }
    }
  ],
  "text": {
    "status": "generated",
    "div": "<div><div class=\"hapiHeaderText\"> Isabella Isa <b>JONES </b></div><table class=\"hapiPropertyTable\"><tbody><tr><td>Identifier</td><td>998991</td></tr><tr><td>Address</td><td><span>1357 Amber Drive </span><br /><span>Beaverton </span><span>OR </span><span>US </span></td></tr><tr><td>Date of birth</td><td><span>01 May 1975</span></td></tr></tbody></table></div>"
  },
  "identifier": [
    {
      "system": "urn:oid:2.16.840.1.113883.19.5.99999.2",
      "value": "998991"
    },
    {
      "system": "urn:oid:2.16.840.1.113883.4.1",
      "value": "111-00-2330"
    }
  ],
  "name": [
    {
      "use": "usual",
      "family": [
        "Jones"
      ],
      "given": [
        "Isabella",
        "Isa"
      ]
    }
  ],
  "telecom": [
    {
      "system": "phone",
      "value": "(816)276-6909",
      "use": "home"
    }
  ],
  "gender": "female",
  "birthDate": "1975-05-01",
  "address": [
    {
      "use": "home",
      "line": [
        "1357 Amber Drive"
      ],
      "city": "Beaverton",
      "state": "OR",
      "postalCode": "97867",
      "country": "US"
    }
  ],
  "maritalStatus": {
    "coding": [
      {
        "system": "urn:oid:2.16.840.1.113883.5.2",
        "code": "M",
        "display": "Married"
      }
    ]
  },
  "contact": [
    {
      "relationship": [
        {
          "coding": [
            {
              "system": "urn:oid:2.16.840.1.113883.5.111",
              "code": "PRN",
              "display": "Parent"
            }
          ]
        }
      ],
      "name": {
        "family": [
          "Jones"
        ],
        "given": [
          "Ralph"
        ]
      },
      "telecom": [
        {
          "system": "phone",
          "value": "(816)276-6909",
          "use": "home"
        }
      ],
      "address": {
        "line": [
          "1357 Amber Drive"
        ],
        "city": "Beaverton",
        "state": "OR",
        "postalCode": "97867",
        "country": "US"
      }
    },
    {
      "relationship": [
        {
          "coding": [
            {
              "system": "urn:oid:2.16.840.1.113883.5.111",
              "code": "GUAR"
            }
          ]
        }
      ],
      "name": {
        "family": [
          "Everyman"
        ],
        "given": [
          "Adam",
          "Frankie"
        ]
      },
      "telecom": [
        {
          "system": "phone",
          "value": "(781)555-1212",
          "use": "home"
        }
      ],
      "address": {
        "use": "home",
        "line": [
          "17 Daws Rd."
        ],
        "city": "Blue Bell",
        "state": "MA",
        "postalCode": "02368",
        "country": "US"
      }
    }
  ],
  "communication": [
    {
      "language": {
        "coding": [
          {
            "code": "en"
          }
        ]
      },
      "preferred": true
    }
  ],
  "managingOrganization": {
    "reference": "Organization/413"
  }
}


"changeType": "new",
"lhs": {
  "resourceType": "Organization",
  "id": "413",
  "meta": {
    "versionId": "1",
    "lastUpdated": "2015-09-21T14:42:59.243+00:00"
  },
  "name": "Community Health and Hospitals",
  "telecom": [
    {
      "system": "phone",
      "value": " 555-555-5000",
      "use": "work"
    }
  ],
  "address": [
    {
      "line": [
        "1001 Village Avenue"
      ],
      "city": "Portland",
      "state": "OR",
      "postalCode": "99123",
      "country": "US"
    }
  ]
}

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.