Name: fba-api
Owner: igemuoftATG
Description: Backend code for our FBA-Interface Web App
Created: 2015-06-17 16:19:48.0
Updated: 2015-07-12 19:57:19.0
Pushed: 2015-09-09 01:44:56.0
Size: 9844
Language: JavaScript
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Backend code for our FBA-Interface Web App
University of Toronto iGEM (international Genetically Engineered Machine) is a student association dedicated to the practice of synthetic biology and dissemination of its scientific foundations. The culmination of each year's efforts is a submission to the iGEM conferences as the University of Toronto team
Name | Reference | Version —–|———–|——– Python & PIP | https://docs.python.org/3/ | 3.4 CobraPy | https://cobrapy.readthedocs.org/en/latest/ | Scipy Stack | http://www.scipy.org/install.html | VirtualEnv | https://virtualenv.pypa.io/en/latest/installation.html | 1.9 LibSBML | http://sbml.org/Software/libSBML | 5.11.4
Ubuntu 14.04 or greater is assumed for these installation guides. Python 3.x is assumed for all instances of Python. Python 2.6 or 2.7 is specifically required for Node installation.
System Wide:
do apt-get update
do apt-get install python3-pip python3-dev libglpk-dev gfortran
do pip-3.2 install virtualenv
rl https://nodejs.org/dist/v0.12.6/node-v0.12.6.tar.gz | tar node-v0.12.6.tar.gz
node-v0.12.6.tar.gz
configure && make && sudo make install
Sciypy & Numpy Stack:
do apt-get install python-numpy python-scipy python-matplotlib ipython ipython-notebook python-pandas python-sympy python-nose
Cobrapy:
do pip install python-libsbml-experimental
do pip install cobra
Actual App
t clone https://github.com/igemuoftATG/fba-api
fba-api
m install
MIT License