Name: synapser
Owner: Sage Bionetworks
Description: An R package providing programmatic access to Synapse
Created: 2015-04-20 23:33:04.0
Updated: 2017-08-23 13:34:59.0
Pushed: 2018-01-16 20:20:10.0
Homepage: null
Size: 625
Language: Python
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The synapser
package provides an interface to
Synapse, a collaborative workspace for
reproducible data intensive research projects, providing support for:
The synapser
package lets you communicate with the Synapse platform to
create collaborative data analysis projects and access data using the R
programming language. Other Synapse clients exist for
Python,
Java,
and the web browser.
synapser
is available as a ready-built package for Microsoft Windows
and Mac OSX. For Linux systems, it is available to install from source.
It can be installed or upgraded using the standard install.packages()
command, adding the Sage Bionetworks R Archive Network (RAN) to the repository list,
e.g.:
all.packages("synapser", repos=c("https://sage-bionetworks.github.io/ran", "http://cran.fhcrc.org"))
Alternatively, edit your ~/.Rprofile
and configure your default
repositories:
ons(repos=c("https://sage-bionetworks.github.io/ran", "http://cran.fhcrc.org"))
after which you may run install.packages
without specifying the
repositories:
all.packages("synapser")
If you have been asked to validate a release candidate, please replace the URL https://sage-bionetworks.github.io/ran with https://sage-bionetworks.github.io/staging-ran, that is:
all.packages("synapser", repos=c("https://sage-bionetworks.github.io/staging-ran", "http://cran.fhcrc.org"))
Please make sure that your machine has the required dependencies listed
in the SystemRequirements
field of the DESCRIPTION file.
To get started, try logging into Synapse. If you don?t already have a Synapse account, register here:
ary(synapser)
ogin()
Please visit the synapser
docs site
or view our vignettes for using the synapser
package:
seVignettes(package="synapser")