OHDSI/PublicOracle

Name: PublicOracle

Owner: Observational Health Data Sciences and Informatics

Description: R Interface to the OHDSI Public Web API [in development]

Created: 2015-04-14 19:31:55.0

Updated: 2017-02-22 15:44:38.0

Pushed: 2016-07-25 19:01:57.0

Homepage:

Size: 12

Language: R

GitHub Committers

User	Most Recent Commit	# Commits
Marc Suchard	2016-07-25 19:02:58.0	13

Other Committers

User	Email	Most Recent Commit	# Commits

README

PublicOracle [In development]

This package provides an simple R interface to the public OHDSI server through the WebAPI and direct SQL queries of the OMOP CDM and public vocabulary.

• To install in R:

  all_github(c("OHDSI/DatabaseConnector","OHDSI/SqlRender"))
  all_github("OHDSI/PublicOracle")
  

• To use:

  ary(PublicOracle)
  

Access the WebAPI

query(“vocabulary/concept/19059796”)

Query the OMOP CDM

getPublicOhdsiColumnNames(tableName = “concept”)

Alternative to WebAPI vocabulary query

getConceptInformation(conceptIds = c(19059796,705755))

Find the common ancestors of multiple concept IDs

findCommonAncestors(conceptIds = c(703470, 705755, 738156))

nse
===
icOracle is licensed under Apache License 2.0.   

lopment
=======
icOracle is being developed in R Studio.

evelopment status

a

owledgements
============
is project is supported in part through the National Science Foundation grants IIS 1251151.