galaxy-iuc/jenkins-testing

Name: jenkins-testing

Owner: Intergalactic Utilities Commission

Description: Jenkins scripts for testing Galaxy tool repos

Created: 2015-04-11 01:34:48.0

Updated: 2016-04-29 16:33:21.0

Pushed: 2015-07-20 19:32:24.0

Homepage: null

Size: 174

Language: Python

GitHub Committers

UserMost Recent Commit# Commits

Other Committers

UserEmailMost Recent Commit# Commits

README

Galaxy Tool testing in Jenkins

Jenkins scripts for testing Galaxy tool repositories

Setup
  1. (Optional) Build a jenkins image (based on https://github.com/jenkinsci/docker) using the supplied Dockerfile.
  2. Configure security and add a new free-style project in jenkins.
  3. Add your tool-repo to jenkins (Bitbucket and Github work fine.)
  4. Make sure that you have .shed.yml files for the tools you want to test. Add an additional section that specifies your test targets in the .shed.yml.
  5. Modify jenkins.sh to suit your needs and run it in your new project.
  6. Download jenkins.sh and execute it in your project.
  7. Publish JUnit reports from reports/*.xml
  8. Publish HTML reports from ${WORKSPACE}/reports/${BUILD_NUMBER}/, index.html
  9. Profit, from your ease-of-mind that all code of your tools are tested automatically.
Known Issues
TODO

Galaxy Repository Pushing from GitHub to the ToolShed


This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.