Name: dnalc_fAPI_apps
Owner: iPlant Collaborative Open Source
Description: DNALC's iPlant foundation API apps
Created: 2015-04-08 18:17:12.0
Updated: 2015-11-13 17:10:56.0
Pushed: 2015-11-16 17:37:09.0
Homepage:
null
Size: 22379
Language: Shell
GitHub Committers
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Other Committers
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README
dnalc_fAPI_apps
DNALC's iPlant foundation API apps
Original app names
- dnalc-fastqc-stampede-0.10.1u1 @jamescarson3
- dnalc-fxtrim-stampede-0.0.13.3u1 @jamescarson3
- dnalc-tophat-stampede-2.0.11.1u1 @mwvaughn
- dnalc-cuffdiff-stampede-2.1.1.2u1 @johnfonner
- dnalc-cufflinks-stampede-2.1.1.2u1 @johnfonner
- dnalc-cuffmerge-stampede-2.1.1u1 @johnfonner
New app names (public)
- dnasubway-fastqc-lonestar-0.11.2.0u1
- dnasubway-fastx-lonestar-0.0.13.2.0u1
- dnasubway-tophat-refprep-lonestar-2.0.11.1u1
- dnasubway-tophat-lonestar-2.0.11.1u1
- dnasubway-cufflinks-lonestar-2.1.1u1
- dnasubway-cuffdiff-lonestar-2.1.1u1
- dnasubway-cuffmerge-lonestar-2.1.1u1
Porting guidelines
- Deploy to a Lonestar4 clone. Use normal queue
- Use showArguments where possible
- Make sure to preserve the original logic and interfaces of the original wrapper scripts
- Create a test job for each application, including input and output files
- /iplant/home/shared/iplant_DNA_subway is writeable by all project maintainers