Duke-GCB/GCB-Dockerfiles

Name: GCB-Dockerfiles

Owner: Duke Center for Genomic and Computational Biology

Description: Docker images for bioinformatic workflows that are built on Docker Hub under the DukeGCB organization.

Created: 2015-04-06 18:48:42.0

Updated: 2017-09-13 14:48:24.0

Pushed: 2017-08-11 14:49:22.0

Homepage: https://hub.docker.com/u/dukegcb/

Size: 74

Language: Python

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README

GCB-Dockerfiles

Docker images for bioinformatic workflows that are built on dockerhub under the dukegcb organization.

Source Repository Organization

Each top level directory in the GCB-Dockerfiles repository corresponds to a dukegcb/<tool-name> docker container. Under this directory will be a directory for each version of the software. Inside each subdirectory will be the Dockerfile. The build context occurs in the directory containing the Docker file.

For example a Dockerfile that builds version 0.11.4 of FastQC would be stored in a file at fastqc/0.11.4/Dockerfile. The build context in this case is in fastqc/0.11.4.

Docker Hub Setup

Each top level directory will have a Automated Build setup with dockerhub.

Under Build Setttings There will be a build rule latest and each version of the software pointing to the specific <tool-name>/<software-version>/Dockerfile on the master branch with the <software-version> as the tag name.

For example if we want to build version 0.11.4 and 0.11.5 of FastQC there would be two dockerfiles: fastqc/0.11.4/Dockerfile and fastqc/0.11.5/Dockerfile.

We would create three build rules on dockerhub for the dukegcb/fastqc container:

    Name   Dockerfile Location         Docker Tag Name
ch  master /fastqc/0.11.5   latest
ch  master /fastqc/0.11.5   0.11.5
ch  master /fastqc/0.11.4   0.11.4