JuliaIO/NRRD.jl

Name: NRRD.jl

Owner: JuliaIO

Description: Julia support for the Nearly Raw Raster Data (NRRD) image file format

Created: 2015-03-15 16:20:27.0

Updated: 2017-01-28 10:40:01.0

Pushed: 2017-07-08 00:16:11.0

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Size: 84

Language: Julia

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README

NRRD

NRRD NRRD Build Status codecov.io

Package for reading NRRD files. Implements the FileIO interface.

Originally located in Images.jl

Writing plain NRRD headers

Normal usage is as easy as

= load("myfile.nrrd")
= load("myfile.nhdr")
("myotherfile.nrrd", img)

However, if you already have a raw binary representing the “data file”, the FileIO interface isn't sufficently flexible for writing just the header. Assuming you want to save “rich” axis information, a low-level approach using AxisArrays is the following:

g NRRD, FileIO, FixedPointNumbers, AxisArrays, Unitful
g Unitful: ?m, s

r a 480x640x200 image with time as the third axis,
suming a pixel spacing of 0.25?m and a framerate of 8fps
= Axis{:y}((1:480)*0.25?m)
= Axis{:x}((1:640)*0.25?m)
= Axis{:time}((1:200)*0.125s)

er = NRRD.headerinfo(N0f16, (axy, axx, axt))  # assuming N0f16 data
er["datafile"] = "mydata.raw"

("mydata.nhdr", "w") do io
write(io, magic(format"NRRD"))
NRRD.write_header(io, "0004", header)


This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.