hurwitzlab/16sblaster

Name: 16sblaster

Owner: Hurwitz Lab

Description: null

Created: 2015-03-10 22:46:46.0

Updated: 2015-09-10 18:11:00.0

Pushed: 2015-09-15 16:20:11.0

Homepage: null

Size: 739

Language: Perl

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README

16S BLASTER

Perl code, etc., for George's paper.

Docker

To build Docker image, first build these programs into the “bin” directory:

To build:

docker build -t 16sblaster .

To run:

docker run --rm -v $(pwd):/work -w /work 16sblaster \
--blast-db /data/blast/16SMicrobial -d fasta -o out \
--accessions /data/accession_organism_map.txt

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.