OHDSI/JCdmBuilder

Name: JCdmBuilder

Owner: Observational Health Data Sciences and Informatics

Description: JCdmBuilder is a Java program that can be used to transform observational datasets from their native formats and schemas into the OMOP Common Data Model.

Created: 2015-01-13 09:41:14.0

Updated: 2016-11-11 15:34:25.0

Pushed: 2017-04-13 08:24:18.0

Homepage:

Size: 17606

Language: R

GitHub Committers

User	Most Recent Commit	# Commits
Martijn Schuemie	2017-04-13 08:24:18.0	47
Peter Rijnbeek	2017-03-10 16:07:36.0	2

Other Committers

User	Email	Most Recent Commit	# Commits
Schuemie	schuemie@profwongra12	2015-01-22 02:37:20.0	1

README

JCdmBuilder

The JCdmBuilder is a Java program that offers various tools that can be used when contructing a data in the OMOP Common Data Model (CDM). It can also be used to transform some specific observational datasets from their native formats and schemas into the CDM.

Features

• This builder supports the following ETLs:
• Healthcare Cost and Utilization Project (HCUP) - Nationwide Inpatient Sample (NIS) to CDM version 4
• Healthcare Cost and Utilization Project (HCUP) - Nationwide Inpatient Sample (NIS) to CDM version 5
• You can also load data in CDM format from CSV files into the database
• Creating the database structure and indices for CDM versions 4 or 5
• Loading the vocabulary from files into the database
• Automatically creating condition and drug eras
• Supports SQL Server, Oracle and PostgreSQL
• Command line interface for automated execution

Screenshot

Technology

JCdmBuilder is a Java program.

System Requirements

• Java

Dependencies

None

Getting Started

1. Under the Releases tab, download the latest JCDMBuilder jar file.
2. Double-click on the jar file to start the application.

There is also a command-line-interface. Type java -jar JCDMBuilder_v?.?.?.jar -usage for more information.

Getting Involved

• User Guide: To be developed
• Developer questions/comments/feedback: OHDSI Forum
• We use the GitHub issue tracker for all bugs/issues/enhancements

License

JCdmBuilder is licensed under Apache License 2.0

Development

Development status

Alpha

Acknowledgements

Janssen Pharmaceutical Research & Development, LLC