stajichlab/localizaTE

Name: localizaTE

Owner: Jason Stajich Lab at UC Riverside

Description: de novo and homology based Transposable Element annotation system

Created: 2014-11-04 18:48:01.0

Updated: 2017-09-13 14:27:37.0

Pushed: 2016-12-21 11:08:20.0

Homepage: null

Size: 14

Language: Python

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README

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localizaTE

de novo and homology based Transposable Element annotation system

Prerequesites:

• Repeatmodeler
  
• Repeatmasker
  
• MITE_hunter
  
• LTRharvest
  
• Uclust
  
• Biopython
  
• Blast2

Download the full manual from the localizaTE manual release for further instructions

UPDATE:

In order to make the results comparable to that described in the original publication, MITE-hunter and TEclass predictions should be considered as 'unknown TEs':

http://journals.plos.org/plosgenetics/article?id=10.1371%2Fjournal.pgen.1006108