Name: ngs
Owner: NMDP/Be The Match Bioinformatics Research
Description: Next generation sequencing (NGS/HTS) tools.
Created: 2014-09-11 16:43:25.0
Updated: 2018-01-09 05:35:48.0
Pushed: 2017-11-13 08:39:26.0
Size: 9794
Language: Java
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Next generation sequencing (NGS/HTS) tools.
Artifacts from this project are available from the Maven Central repository.
E.g.
endency>
roupId>org.nmdp.ngs</groupId>
rtifactId>ngs-align</artifactId>
ersion>${version}</version>
pendency>
The ngs-tools module builds several command line tools.
For example
s-downsample-fastq -h
e:
downsample-fastq -p 0.5 [args]
ments:
a, --about display about message [optional]
h, --help display help message [optional]
i, --input-fastq-file [class java.io.File] input FASTQ file, default stdin [optional]
o, --output-fastq-file [class java.io.File] output FASTQ file, default stdout [optional]
p, --probability [class java.lang.Double] probability a FASTQ record will be removed, [0.0-1.0] [required]
z, --seed [class java.lang.Integer] random number seed, default relates to current time [optional]
Install
To build
$ mvn install