EDRN/labcas-pipelines

Name: labcas-pipelines

Owner: Early Detection Research Network

Description: Repository for the Laboratory Catalog and Archive Service (LabCAS) Data Processing Pipelines

Created: 2014-07-31 17:48:39.0

Updated: 2014-11-20 22:12:41.0

Pushed: 2015-06-01 19:19:33.0

Homepage: null

Size: 71532

Language: Java

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README

REQUIREMENTS:

  1. Set up your Win and Linux environment variables by installing and sourcing the bash env config file:

    Modify and copy to your home directory on your own respective machines: LINUX: backend/linux/config/src/main/conf/.bashrc WINDOWS: backend/win/config/src/main/conf/.bashrc

    source .bashrc

  2. LabCAS backend infrastructure a. A deployed LabCAS backend infrastructure on the LINUX machine, including filemgr and crawler b. The LABCAS_HOME environment variable pointing to the installation of LabCAS backend

BUILDING/DEPLOYMENT STEPS:

  1. (Optional) Edit top-level pom.xml and modify install.directory and user.directory
  2. LINUX: mvn install -Plinux
  3. WINDOWS: mvn install -Pwindows

For further, and more specific directions, please see pipeline deployment guide: http://edrn.me/7W


This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.