biocore/burrito-fillings

Name: burrito-fillings

Owner: biocore

Description: Application controllers for command line bioinformatics applications

Created: 2014-03-14 17:30:24.0

Updated: 2016-03-07 16:01:55.0

Pushed: 2016-03-07 16:01:54.0

Homepage: null

Size: 516

Language: Python

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README

burrito-fillings

burrito-fillings (canonically pronounced boar-ee-toe phil-ings; python package name bfillings) contains burrito CommandLineApplication subclasses (i.e., application controllers) for bioinformatics applications. This is intended to be a temporary package for the application controllers that are used in QIIME as we figure out which of these we will continue to support.

Note: burrito fillings is currently under active development and its API is not stable. Major compatibility-breaking API changes will likely happen as development progresses.

The pre-history of burrito-fillings

burrito-fillings derives from code in PyCogent and QIIME, and the contributors and/or copyright holders have agreed to make the code they wrote for PyCogent and/or QIIME available under the BSD license. The contributors to PyCogent and/or QIIME modules that have been ported to bfillings are: Rob Knight (@rob-knight), Gavin Huttley (@gavin-huttley), Daniel McDonald (@wasade), Micah Hamady, Antonio Gonzalez (@antgonza), Sandra Smit, Greg Caporaso (@gregcaporaso), Jai Ram Rideout (@jairideout), Cathy Lozupone (@clozupone), Mike Robeson (@mikerobeson), Kyle Bittinger, Marcin Cieslik, Peter Maxwell, Jeremy Widmann, Zongzhi Liu, Michael Dwan, Logan Knecht (@loganknecht), Andrew Cochran, Jose Carlos Clemente (@cleme), Damien Coy, and Levi McCracken.


This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.