Name: quince
Owner: Hammer Lab
Description: Scalable genome variant analytics using the ADAM project
Created: 2014-03-02 23:53:50.0
Updated: 2015-02-02 14:50:48.0
Pushed: 2014-03-05 21:35:37.0
Homepage: null
Size: 121
Language: C++
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Scalable genome variant analytics using BDG-formatted data.
This repository is designed to show some downstream applications, once you have an analysis-ready VCF and any annotations of interest. This will especially be targeting using Impala for genome analysis, but not limited to it. Types of things you might find here:
UDFs for feature extraction and statistics (perhaps some PLINK-like functionality)
Patterns for ingesting common data sets and performing analysis in SQL; integration with annotation data
Working with eQTL data
Support (UCSC) browser-like functionality
Contributions are welcome.
Example 1
Contains a variant data schema being experimented with by the Broad Institute. Includes UDFs to generate the proper fields.