Name: tax2tree
Owner: biocore
Description: Automated taxonomy decoration onto a tree
Created: 2014-02-11 15:16:24.0
Updated: 2016-04-30 21:49:35.0
Pushed: 2014-11-12 21:37:23.0
Homepage: null
Size: 662
Language: Python
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tax2tree assists in decorating an existing taxonomy onto a phylogenetic tree with overlapping tip names.
An example test tree and input consensus set can be found in tests/data. Once tax2tree is installed and paths are setup appropriately (see INSTALL), you can run the following to reproduce the output seen in Figure 1 in McDonald et al. 2011.
$ t2t decorate -t tests/data/test_consistency.ntree -m tests/data/test_consistency.cons -o test_output
Daniel McDonald (mcdonadt@colorado.edu)