SynBioDex/SEVA

Name: SEVA

Owner: Synthetic Biology Data Exchange Group

Description: SBOL representation of plasmids that conform to the Standard European Vector Architecture

Created: 2018-05-18 03:06:45.0

Updated: 2018-05-18 03:07:31.0

Pushed: 2018-05-18 03:07:29.0

Homepage: null

Size: 111

Language: Python

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README

SEVA in SBOL

The script seva.py constructs an SBOL representation of plasmids that conform to the Standard European Vector Architecture (SEVA). Custom cargos can be ``cloned'' into the SEVA multiple cloning site.

DEPENDENCIES

The seva.py script depends on pySBOL. For installation options, go to Installation Page.

EXAMPLE

eate a custom insert in the Cargo region
= Document()
 doc.componentDefinitions.create('insert')
= doc.sequences.create('insert')
elements = 'actg'
equence = seq
Cargo('my_cargo')
sert(cd, 'PstI', 'SpeI')  # insert the cargo between the PstI and SpeI restriction sites

ite the SEVA vector as SBOL
er_id = 1  # According to SEVA standard, the selection marker can be 1 - 6
in_id = 1  # The origin marker can be 1 - 9
SEVAVector('pSEVA11my_cargo', marker_id, origin_id, c)  # Writes the file pSEVAmy_cargo.xml