soedinglab/MMseqs2-App

Name: MMseqs2-App

Owner: Söding Lab

Description: A GUI for MMseqs2 to run on your workstation or servers

Created: 2018-04-19 11:49:04.0

Updated: 2018-04-25 22:20:28.0

Pushed: 2018-04-25 22:20:27.0

Homepage: https://search.mmseqs.com

Size: 7659

Language: JavaScript

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README

MMseqs2 App and Server

MMseqs2 is a software suite to search and annotate huge sequence sets. We built a graphical interface to make it more useful for interactive data exploration.

The application runs either:

• on your workstation as a cross-platform desktop application with the help of the electron framework
• on your server through docker-compose, where it can make your sequence or profile databases easily accessible over the web

Desktop App

Head over to the release page and download the latest version. We currently support Linux, macOS and Windows.

Adding a search database

Once the app is installed, open the Settings panel. There you can add either sequence databases in FASTA format, such as our Uniclust databases or profile databases in Stockholm format, such as the PFAM.

Building the desktop app

You need to have git, go, node, npm and make installed on your system.

Afterwards run the following commands, and the apps will appear in the build folder.

one the repository
clone https://github.com/soedinglab/MMseqs2-App.git
Mseqs2-App

stall all dependencies
install

ild the app for all platforms
run electron:build

Web app quickstart with docker-compose

Make sure you have docker (>=17.05), docker-compose (>=1.20.0) and git installed on your server. To start the MMseqs2 web server execute the following commands:

one the repository
clone https://github.com/soedinglab/MMseqs2-App.git

vigate to our docker recipes
Mseqs2-App/docker-compose

wnload the uniclust sequence database
amples/uniclust/setup.sh

n the docker-compose script
er-compose up

Head over to the docker recipe readme for more details on running your own server.

License

This application is licensed under GPLv3. See the LICENSE file.