wtsi-hgi/vareval

Name: vareval

Owner: Wellcome Trust Sanger Institute - Human Genetics Informatics

Description: A collection of scripts for evaluating variant callers

Created: 2018-03-28 13:18:15.0

Updated: 2018-03-28 13:18:21.0

Pushed: 2018-03-28 13:18:19.0

Homepage: null

Size: 5

Language: Python

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README

vareval

A collection of scripts for evaluating variant callers.

• clean_vcfs.sh and part of preprep.sh: gets vcfs into a form which can be fed into hap.py
• vcf_to_matrix.sh: convert the hap.py results to a matrix
• matrix_stats.py: the old python statistics generator for matrices generated by hap.py