thehyve/cbioportal-gsva-analysis

Name: cbioportal-gsva-analysis

Owner: The Hyve

Description: GSVA score and p-value calculation for TCGA studies in cBioPortal

Created: 2018-02-05 10:00:19.0

Updated: 2018-02-05 10:47:32.0

Pushed: 2018-02-05 10:47:31.0

Homepage: null

Size: 6

Language: R

GitHub Committers

UserMost Recent Commit# Commits
dionnezaal2018-03-14 09:33:41.014
Sander Tan2018-02-05 10:02:46.01

Other Committers

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README

cBioPortal GSVA analysis

GSVA score and p-value calculation for TCGA studies in cBioPortal

Build the docker file in the folder with the dockerfile
un the analysis
t variables: expression data file, geneset file, meta expression file, prefix output files, number of cores, number of bootstraps
The bootstrapping method is explained in: GSVA-bootstrap-method.md

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.