CDCgov/GaTech-Fall2017-Newborn-FHIRFighters

Name: GaTech-Fall2017-Newborn-FHIRFighters

Owner: Centers for Disease Control and Prevention Surveillance Strategy

Description: GaTech-Fall2017-Newborn-FHIRFighters

Created: 2017-11-28 12:16:58.0

Updated: 2018-03-22 20:56:29.0

Pushed: 2018-03-22 20:56:27.0

Homepage: null

Size: 7345

Language: Ruby

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README

Newborn Screening Data on FHIR

Background

The Utah Newborn Screening Program collects a variety of demographic data from the screening specimen that is sent in for a newborn. Often the data collected is missing or inaccurate. In order to complete the data and/or ensure accuracy, the Utah Newborn Screening Program compares this data against the Utah Office of Vital Records and Statistics data from birth and death certificates. The current process is antiquated and would benefit from the usage of a newer technology like FHIR. The full specification can be retrieved here.

This application provides an FHIR interface to compare the data between the Utah Newborn Screening Program and the Utah Office of Vital Records and Statistics.

How To Run
  1. Ensure the correct versions of Docker and Docker Compose are installed per the dependencies.
  2. Run docker-compose up.
  3. The application is at http://localhost:3000
  4. The associated FHIR instance is available at http://localhost:8080
How To Deploy

The main Rails application can be deployed as a containerized application. The application can be configured with the following environment variables:

| Variable | Description | |—————————|————————————————–| | DATABASE_URL | URL to PostgreSQL database. See: database.yml | | FHIR_URL | URL to FHIR server. | | RAILS_ENV | Environment. Recommended: production | | RAILS_RELATIVE_URL_ROOT | Deploy to a relative root. Example: /app |

How To Set Up For Native (Local) Development
  1. Ensure all the dependencies are installed.
  2. Run bin/setup.
  3. Run bin/rails server.
How To Test
  1. Ensure all the dependencies are installed.
  2. Run bin/test.
Dependencies

This is a Rails v5.1.4 application that requires:

This work is supported by the National Institutes of Health's National Center for Advancing Translational Sciences, Grant Number U24TR002306. This work is solely the responsibility of the creators and does not necessarily represent the official views of the National Institutes of Health.