biolab/monroe-anal

Name: monroe-anal

Owner: Bioinformatics Laboratory

Description: A Python 3 utility library for querying, analyzing, and visualizing MONROE data.

Created: 2017-09-04 15:02:21.0

Updated: 2017-11-21 17:56:35.0

Pushed: 2017-12-01 03:57:30.0

Homepage:

Size: 141

Language: Python

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README

MONROE Analysis

A Python 3 utility library for querying, analyzing, and visualizing MONROE data.

Installation

Run the following command line in the Python 3 environment of choice:

pip install git+https://github.com/biolab/monroe-anal

As the project API is as of yet considered unstable, we recommend installing in development mode:

git clone https://github.com/biolab/monroe-anal
cd monroe-anal
pip install -e .

# Run tests to confirm the package is installed correctly
python setup.py test

Then issue git pull within monroe-anal directory every now and then. The alternative is to re-run above pip install git+... command whenever updating is desired.

Usage

For help on how to query data, see the relevant Jupyter notebook. In general, see Jupyter notebooks in the notebooks directory for usage examples.