RADAR-CNS/RADAR-RedcapIntegration

Name: RADAR-RedcapIntegration

Owner: RADAR-CNS

Owner: RADAR-CNS

Description: null

Created: 2017-08-25 17:21:02.0

Updated: 2017-08-25 17:27:22.0

Pushed: 2017-11-29 13:19:22.0

Homepage: null

Size: 267

Language: Java

GitHub Committers

User	Most Recent Commit	# Commits
Amos Folarin	2017-10-31 14:03:48.0	4
Francesco Nobilia	2017-09-06 16:08:59.0	17
Denny Verbeeck	2017-10-25 07:06:50.0	18
Yatharth Ranjan	2017-10-25 10:17:51.0	15

Other Committers

User	Email	Most Recent Commit	# Commits

README

RADAR-CNS REDCap Integration

REDCap is a secure web application for building and managing online surveys and databases. While REDCap can be used to collect virtually any type of data (including 21 CFR Part 11, FISMA, and HIPAA-compliant environments), it is specifically geared to support online or offline data capture for research studies and operations. The REDCap Consortium, a vast support network of collaborators, is composed of thousands of active institutional partners in over one hundred countries who utilize and support REDCap in various ways.

In REDCap, it is possible to set a Data Entry Trigger. is an advanced feature. It provides a way for REDCap to trigger a call to a remote web address (URL), in which it will send a HTTP Pos request to the specified URL whenever any record or survey response has been created or modified on any data collection instrument or survey in this project (it is not triggered by data imports but only by normal data entry on surveys and data entry forms). Its main purpose is for notifying other remote systems outside REDCap at the very moment a record/response is created or modified, whose purpose may be to trigger some kind of action by the remote website, such as making a call to the REDCap API.

For setting a Data Entry Trigger

1. login in a REDCap project using a project admin account
2. go to Project Setup view
3. go to Enable optional modules and customisations and click to Additional customisations
4. add a valid URL
5. verify if the URL is accessible from REDCap
6. enable Data Entry Trigger
7. click on Save

This project exposed a REST endpoint located at <host>:<port>/redcap/trigger or <host>/redcap/trigger is mapped to http default 80 port.

It is highly recommended to use an encrypted connection (i.e. SSL/HTTPS) for accessing set Data Entry Trigger.

How does it works

Upon receiving a request, the service verifies whether the trigger is related to the REDCap enrolment event. If so, it triggers a Subject creation in the RADAR-CNS Management Portal. After creating a new subject, the serivce update the RADAR REDCap RADAR Enrolment form adding:

• RADAR-CNS Subject Identifier: unique identifier within the a RADAR-CNS Platform instance
• Human Readable Identifier: unique identifier used for visualising data At the end of the process, the RADAR Enrolment will become COMPLETED.

The RADAR Enrolment establish a relation between data stored in REDCap and data stored in the RADAR-CNS Platform.

Configuration

This service requires a configuration file named radar.yml that can be stored at:

• /usr/share/tomcat8/conf/
• /usr/local/tomcat/conf/radar/
• at the path provided by the environment variable CONFIG_FOLDER

The configuration should follow this template. For each supported project, the projects variable should contains a item like

ap_info:
l: #URL pointing REDCap instance
oject_id: #REDCap project identifier
rolment_event: #Unique identifier for the enrolment event
tegration_form: #Name of integration REDCap form
ken: #REDCap API Token used to identify the REDCap user against the REDCap instance
nfo:
oject_id: #Management Portal project identifier

The service validates the configuration file during the deploy phase. If the file is invalid, the deploy is stopped.

Log files

The project has been created to be deployed on Apache Tomcat. Application logs are redirected to standard output. In case of invalid deploy check $CATALINA_HOME/logs/catalina.* and $CATALINA_HOME/logs/localhost.*

Docker deploy example

1. Go to root directory and use the gradle wrapper to create war file for the web app like this. The WAR file is created in ?root/build/libs/? $ ./gradlew clean war
2. Change the ADD command in Dockerfile to copy the WAR file just created in root/build/libs to tomcat webapps for deployment ADD ./build/libs/redcap-1.0-SNAPSHOT.war $CATALINA_HOME/webapps/redcap.war
3. Then build the docker image naming it redcap using the Dockerfile located in root directory $ docker build -t redcapintegration .
4. Then run the app in a container using using the image created above mapping port 80 (HTTP default) to 8080 (container) $ docker run --name redcapintegration -it --rm -d -p 80:8080 redcapintegration
5. Access the entry point like this $ curl -X POST ?<Host IP or URL>/redcap/trigger?
6. Or if accessing on the same machine as the container do $ curl -X POST ?http://localhost/redcap/trigger
7. Please note that the radar.yml config file should be valid or else the deploy will fail.

Credits

Part of this document has been extracted from the REDCap documentation.